Sciences & Engineering — Biological & Agricultural Sciences
Biochemistry & Biotechnology

Librarian Subject Specialist

Ruth Gustafson
ragustafson@lib.ucdavis.edu — (530) 752‑1883 — Biological/Agricultural Sciences Reference Department (http://www.lib.ucdavis.edu/dept/bioag/)

August 2011+: Temporary Librarian Subject Specialist for: Molecular and Cellular Biology; and Neurobiology, Physiology and Behavior. Includes biochemistry, bioengineering, biophysics, biostatistics, computational biology, exercise biology, and genetics

Need assistance? Email bioagquestions@lib.ucdavis.edu April 8-25, 2013. Ruth Gustafson will have office hours Mon/Fri 11am-noon starting Friday, April 26 through Monday, June 3, 2013 (exceptions Friday, May 10th; Monday, May 27).

SUNDAY Reference -- Available at 1st floor Shields, May 5th, 1-5pm

  • [Restricted] Restricted to UC Davis Campus and authenticated VPN/Proxy users
  • [Restricted] Library Use or On-Campus Use Only
  • Click on VPN to access resource via Library VPN (requires Kerberos login)

Subject Specific Databases

PubMed (http://uclibs.org/PID/17708) [Restricted] VPN
Citations and abstracts for articles published in approximately 8,400 journals in medicine, life sciences, health administration, veterinary medicine, nursing, molecular biology and genetics. PubMed is a service of the U.S. National Library of Medicine.
Coverage: 1946-present
Related:
BIOSIS Previews [via Web of Knowledge] (http://isiknowledge.com/BIOSIS) [Restricted] VPN

NEW interface loaded July 17, 2011 -- result retrievals will be larger due to search design changes.

More than 22 million records in all life science areas, including agriculture, biochemistry, biomedicine, biotechnology, ecology, environmental sciences, genetics, microbiology, plant biology, veterinary medicine & pharmacology, and zoology. Indexes over 6000 journals, serials, books and book chapters, conference proceedings and patents.

Coverage: 1926-present
Related:
Embase (http://www.embase.com) [Restricted] VPN

Embase is a biomedical and pharmacological database containing bibliographic records with citations, abstracts and indexing derived from biomedical articles in peer reviewed journals, and is especially strong in its coverage of drug and pharmaceutical research and conference abstracts.

Embase contains over 22 million records spanning 1974-present, with over 1 million records added annually. Each record contains the full bibliographic citation, indexing terms, and codes; and 80% of all citations in Embase include author-written abstracts. The Embase journal collection is international with over 7,500 active peer-reviewed journals more than 90 countries.

All MEDLINE records produced by the National Library of Medicine (NLM) are included, as well as over 5 million records not covered in MEDLINE. To *exclude* these duplicate MEDLINE/PubMed records, go to Advanced Search and uncheck MEDLINE under the "Records from" category.

Scope which is more extensive or has more European coverage than MEDLINE/PubMed includes the following areas:

  • Drug therapy and research, including pharmaceutics, pharmacology and toxicology
  • Biotechnology and biomedical engineering, including medical devices
  • Health policy and management, including pharmacoeconomics
  • Public, occupational and environmental health, including pollution control
  • Alternative and complementary medicine
Coverage: 1974-current (for EMBASE records); 1966-current (for MEDLINE records)
Related:
SciFinder [Registration Required] (https://scifinder.cas.org) [Restricted] VPN
SciFinder is the most comprehensive bibliographic database for scholarly research in the field of chemistry. It contains over 29 million citations and indexes over 10,000 journals, covering all aspects of chemistry, including chemical aspects of: biology and life sciences, engineering and materials science, food science, geology, medicine, physics, and polymer science. SciFinder also allows searching of chemical substances, chemical reactions, and includes some property data and spectra. It is the online version of Chemical Abstracts. Includes Cited Reference Searching: 1996 - present.
Coverage: 1907-present (with selected pre-1907 material)
Location: SciFinder Scholar can only be used by UC students, faculty and staff. Registration is required (see below)
Related:
CrossFire - Beilstein and Gmelin Databases. NOTE: The CrossFire platform will be replaced by REAXYS as of January 1, 2011.
The CrossFire search interface provides access to the Beilstein and Gmelin databases. The Beilstein database contains information on over 8 million compounds and more than 5 million chemical reactions. It provides comprehensive coverage of reactions, structures, and properties in organic chemistry, references to the literature are also given. For each compound, up to 350 chemical and physical data fields of critically evaluated data are available. The Gmelin database contains information on over 1.4 million compounds, including: coordination compounds, alloys, solid solutions, glasses and ceramics, polymers, and minerals. It provides comprehensive coverage of structures and properties in inorganic and organometallic chemistry, references to the literature and information on reactions (over 900,000) are also included.
Related:
  • REAXYS (https://www.reaxys.com)

General Databases

Industrial and Applied Microbiology [via Proquest] (http://www.csa2.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=microbiology-a&adv=1) [Restricted] VPN
Covers significant findings and practical applications in agricultural, food and beverage, chemical, and pharmaceutical industries.
Coverage: 1982-present
Related:
Conference Papers Index [via Proquest] (http://search.proquest.com/cpi/advanced) [Restricted] VPN
Major areas of coverage include agriculture, biochemistry, chemistry, chemical engineering, forestry, biology, environmental science, soil science, biotechnology, and clinical medicine.
Coverage: 1982-present
Related:
Science Citation Index Expanded [via Web of Knowledge] (http://isiknowledge.com/wos) [Restricted] VPN

NEW interface loaded July 17, 2011 -- result retrievals will be larger due to search design changes.

Multidisciplinary database, with searchable author abstracts, covering the journal literature of the sciences. It indexes more than 6,650 major journals across 150 scientific disciplines. Search for articles that cite a known author or work.

Coverage: 1900-present
Related:
Business Source Complete [via Ebsco] (http://uclibs.org/PID/126938) [Restricted] VPN
"Indexing and abstracts for the most important scholarly business journals back as far as 1886 are included. In addition to the searchable cited references provided for more than 1,200 journals, Business Source Complete contains detailed author profiles for the 25,000 most-cited authors in the database." Business Source Complete is an upgrade from Business Source Premier
Coverage: coverage varies by title with some going as far back as 1886.
Related:
F1000Prime (http://f1000.com/prime) [Restricted] VPN
Author: Faculty of 1000

Faculty of 1000 (F1000) Biology & Medicine are merged into one and now called F1000Prime. Includes over 40 Faculties (Broad subject areas such as biochemistry, ecology or plant biology), which are further subdivided into over 300 Sections. On average, 1,500 new evaluations are published each month. Faculty members are more than 5,000 experts worldwide, assisted by 5,000 associates.

F1000Prime is a "literature awareness tool that is updated continuously and comprehensively and systematically highlights and reviews the most interesting papers published in the biological and medical sciences, based on the recommendations of a faculty of leading researchers. Through immediate rating of individual papers by the authors' peers, F1000 [Prime] highlights papers on the basis of their scientific merit rather than that of the journal in which they appear."

Related:

Protocols and Methods Resources

Current Protocols Series (http://www.currentprotocols.com/) [Restricted] VPN
Ten major laboratory methods and protocols series covering the areas of molecular biology, nucleic acid chemistry, cell biology, protein science, immunology, neuroscience, human genetics, pharmacology, toxicology, and cytometry. Includes basic, alternate, and support protocols with literature cited and information on suppliers for standard materials and preparation information for reagents and solutions. IMPORTANT NOTE: UC Davis does *NOT* license the following seven protocol titles: "Bioinformatics", "Chemical Biology", "Essential Laboratory Techniques", "Food Analytical Chemistry" (inactive series), "Magnetic Resonance Imaging", "Microbiology", and "Stem Cell Biology".
Coverage: Updated quarterly or more frequently
Related:
Springer Protocols (http://www.springerprotocols.com/) [Restricted] VPN
Springer Protocols contains more than 31,000 (as of March 2013) molecular biology and biomedical peer-reviewed protocols, mostly from the classic series Methods in Molecular Biology, formerly published by Humana Press. Other series included are: Methods in Molecular Medicine; Methods in Biotechnology; Methods in Pharmacology and Toxicology; and Neuromethods. Also included are protocols from laboratory handbooks, such as The Biomethods Handbook, The Proteomics Handbook, and the Springer Laboratory Manuals.
Coverage: 1980-present
Related:
  • Ten-page User Guide (http://www.springer.com/cda/content/document/cda_downloaddocument/SpringerProtocolsUserGuide.pdf?SGWID=0-0-45-517798-0)
Cold Spring Harbor Protocols (http://cshprotocols.cshlp.org/search.dtl) [Restricted] VPN

A definitive, interactive source of new and classic research techniques. The database covers specific sections on: Antibodies, Bioinformatics/Genomics, Cell Biology, Chromatography, Computational Biology, DNA Delivery/Gene Transfer, Electrophoresis, Genetics, High-Throughput Analysis, Imaging/Microscopy, Immunology, Laboratory Organisms, Molecular Biology, Neuroscience, Plant Biology, Polymerase Chain Reaction (PCR), Proteins and Proteomics, RNA Interference (RNAi)/siRNA, Stem Cells, and Transgenic Technology. Unique to this resource is the ability to submit a protocol. Other unique features include protocol recipes and protocol cautions.

Coverage: 2006-present
Related:
  • Search Help (http://www.cshprotocols.org/help/search_help.dtl)
Journal of Visualized Experiments (JoVE) (http://www.jove.com/) [Restricted] VPN
Author: MYJoVE Corporation
Journal of Visualized Experiments (JoVE) is a peer reviewed, PubMed indexed journal devoted to the publication of biological, medical, chemical and physical research in a video format.
Coverage: Access currently to JoVE General section ONLY; no access to subsections Neuroscience, Immunology & Infection, Clinical and Translational Medicine, Bioengineering or Basic Protocols
Date: 2006-
Methods in Enzymology (http://uclibs.org/PID/61958) [Restricted] VPN
Methods in Enzymology is the classic laboratory methods/protocols book series. The complete backfile of the full-text is available back to volume 1 from 1955. Direct article/chapter links are provided from core subject databases such as PubMed and BIOSIS Previews. Contains detailed protocols and descriptions of biochemical and biophysical techniques for research in biological and molecular sciences. More than 300 volumes are browse-able by individual volumes online from 1955 to the present or by searching across the collection by title, author, abstract, and keyword. Full-text access to articles is available in HTML and PDF formats.
Coverage: 1955-

Handbooks & Tables

MicroMedex-ChemKnowledge (http://csi.micromedex.com/) [Restricted] VPN

Includes information (some full-text) on thousands of potentially hazardous chemicals, focusing on effects of hazardous substances on humans and the environment. Among the databases available via the ChemKnowledge link are: Integrated Risk Information System (IRIS); Registry of Toxic Effects of Chemical Substances (RTECS); Hazardous Substances Data Bank (HSDB); Oil and Hazardous Material Technical Assistance Data (OHM/TADS); Chemical Hazard Response Information System (CHRIS); and National Institute for Occupational Safety and Health (NIOSH) Pocket Guide to Chemical Hazards.

Sax's Dangerous Properties of Industrial Materials (http://uclibs.org/PID/96484) [Restricted] VPN
The primary source for those who need to evaluate the hazardous potential of substances used in commerce. Combines data on toxicological, flammability, reactivity, explosive potential, and regularity information on approximately 26,000 substances, including 2600 new entries. Also includes Immediately Dangerous Life or Health (IDLH) levels for approximately 1,000 chemicals. It also covers exposure-level classifications for a number of regulatory agencies, from OSHA to the U.S. Department of Transportation. Especially important in areas of industrial hygiene, safety, emergency response, law, and policy making.
Date: 2005
Related:
  • Backup address to homepage (http://uclibs.org/PID/96484)
  • Print copy
    PSE Reference T55.3 H3 S3
    use the index to locate substance by name, or CAS number
CHEMnetBASE [via CRC Press] (http://www.chemnetbase.com/) [Restricted] VPN
Collection of searchable major chemical reference works.
Related:

Electronic Book and Document Collections

Electronic books in the Biological and Health Sciences (http://www.lib.ucdavis.edu/dept/hsl/resources/etext/)
Subject listing of electronic books (handbooks, textbooks, guides) in basic biological and related health sciences disciplines/specialties and subdisciplines/subspecialties. Includes online books in general biology, biochemistry, endrocrinology & metabolism, genetics, microbiology & virology, molecular biology, neurology, nutrition, physiology, toxicology and veterinary medicine. All books are searchable at chapter-level. [Compiled by the UCD Carlson Health Sciences Library]
Springer eBooks Package (http://springerlink.com/books/) [Restricted] VPN
This UC-wide pilot is now (2013) a three-year package for Springer eBooks and includes more than 55,000 titles in English (and selectively in German) from every scientific discipline and many social sciences. This online interface enables all books to be searchable at the full-text level. Scope (textbook areas are starred) ranges from Architecture and Design, *Behavioral Science, *Biomedical and Life Sciences, *Business and Economics, *Chemistry and Materials Science, *Computer Science, *Earth and Environmental Science, *Engineering, *Humanities & Social Sciences and Law, *Mathematics and Statistics, *Medicine, *Physics and Astronomy, to Professional and Applied Computing. NEW books are added monthly. NEW INTERFACE as of November 26, 2012.
Coverage: 2005-2013
Related:
Science of Synthesis (http://uclibs.org/PID/96558) [Restricted] VPN
Pop-up blockers must be disabled

Science of Synthesis provides an authoritative review of synthetic methods from the early 1800s to the present, for the field of organic and organometallic chemistry. Each method is evaluated and includes full experimental details. Source literature includes all published journal articles, books, and patent literature. Science of Synthesis is full-text, structure, and reaction searchable. A plug-in may be required for structure searching; chemical drawing packages can be used (see "Related" section below). The database also provides links to the primary literature and to related information in the Houben-Weyl electronic archive. (All 4 editions, and the supplemental "E-series" volumes, of the Houben-Weyl Methods of Molecular Transformations are included in Science of Synthesis.)

Coverage: 1800's to present [Science of Synthesis will be published in a total of 49 volumes between 2000 and 2008. See Publication Schedule in "Related" section below.]
Related:
Journal Citation Reports (JCR) (http://uclibs.org/PID/36787) [Restricted] VPN

Journal Citation Reports is an annual publication by Thomson Reuters with each yearly data analysis being completed in the following year. The most recent edition is always published in the summer following the year analyzed. Journal Citation Reports can show you the most frequently cited journals in a field, the highest impact journals in a field, and the largest journals in a field. JCR Science Edition contains data from over 7,300 journals in science and technology. JCR Social Sciences Edition contains data from over 2,200 journals in the social sciences. NOTE: For disciplines that have longer timespans for citation, consider sorting for ranking by using the newer 5-year Impact Factor.

Coverage: 2007-2011
Date: 2011
Related:
Safari Tech Books Online (http://uclibs.org/PID/33109) [Restricted] VPN
A collection of computing books that includes the full text of over 1700 O'Reilly Press books, dating from 1999 to the present. Safari will grow to include all new O'Reilly titles. The full-text is searchable across titles and searches can be limited to code fragments. Books can also be browsed by topic. Access is limited to 41 simultaneous UC connections.
Coverage: 1999-present
Related:

Encyclopedias & Dictionaries

Dictionary of DNA and Genome Technology (book) (http://onlinelibrary.wiley.com/book/10.1002/9781118447567;jsessionid=F32362F0D218DAB61F4DC278EC65DF59.d02t04)
Author: Paul Singleton
3rd Edition. From Wiley-Blackwell's description: this edition is a "major update, with over 3000 references from mainstream journals and data from the very latest research ... It covers topics relevant to medicine (diagnosis, genetic disorders, gene therapy); veterinary science; biotechnology; biochemistry; pharmaceutical science/drug development; molecular biology; microbiology; epidemiology; genomics; environmental science; plant science/agriculture; taxonomy; and forensic science."
Date: 2013
Kirk-Othmer Encyclopedia of Chemical Technology (http://uclibs.org/PID/12129) [Restricted] VPN
Comprehensive online chemical technology encyclopedia with more than 1,000 articles written by a panel of prominent scholars from industry, academia, and research institutions from around the world. Topics covered include: Analytical Techniques; Biochemistry & Biotechnology; Chemical Reactions; Dyes and Pigments; Energy; Environmental Protection and Industrial Safety; Fat, Oil, Food and Feed, Cosmetics; Inorganic Chemicals; Materials; Metals and Alloys; Organic Chemicals; Pharmaceuticals; Polymers and Plastics; Processes & Process Engineering; and Renewable Resources (Monthly updates)
Related:
  • Also in print
    PSE Reference TP9 E685
Ullmann's Encyclopedia of Industrial Chemistry (http://uclibs.org/PID/12130)
Related:
  • Also in print
    PSE Reference TP9 U57 1985
Encyclopedia of Reagents for Organic Synthesis (e-EROS) (http://onlinelibrary.wiley.com/mrw/advanced/search?doi=10.1002/047084289X) [Restricted] VPN
The Encyclopedia of Reagents for Organic Synthesis, e-EROS, provides updated information on approximately 3,800 reagents with a database of close to 50,000 reactions. Each reagent entry includes properties such as physical data, solubility, form supplied in, purification, and preparative methods; examples of use in reactions; and literature references. Search options include: name, CAS number, structure and reaction.
Related:
  • Also in print
    PSE Reference QD77 E53 1995
  • Structure and reaction searching require plug-ins, which may not be available on all library computers.
Dictionary of Scientific Biography (complete) [via Gale Virtual Reference Library] (http://find.galegroup.com/gvrl/infomark.do?type=aboutBook&prodId=GVRL&eisbn=9780684315591&version=1.0) [Restricted] VPN
This classic encyclopedia covering scientists from all time periods and all fields of science has been completely revised. This "complete" online version includes all the entries from both the new (2008) edition and the original edition.

Images

Images database [NCBI] (http://www.ncbi.nlm.nih.gov/images)

SEE ALSO Open-i listed below. The NCBI Images database is no longer directly searchable but can be accessed via searching in PubMed Central. Included are millions of scientific images from NCBI full text resources.

See "related" note below about the change.

Copyright Notice: These images are drawn from journal articles and other documents that are protected by copyright. The same copyright applies to the images. Some documents - a relatively small subset - are available with a Creative Commons or similar license that generally allows more liberal redistribution and reuse of the material. In the absence of a copyright or license statement to the contrary, users should assume that standard copyright protection applies. See the PMC copyright notice for more information.

Date: July 2012
Related:
  • Change to NCBI Images access (http://www.nlm.nih.gov/pubs/techbull/so10/so10_pm_display_ncbi_images.html#note)
    May 26, 2011: From NN/LM Pacific Southwest Region NCBI Images Database One of our Network members wondered if the NCBI Images database had disappeared because the link no longer worked. I checked the drop down menu in PubMed—the last location I had seen the Images database. It wasn’t there! Here’s the answer I received from CustServ: “The Images database was incorporated into PubMed Central (PMC). For example if you go to PMC and search for Protease-coupled PPIase assay, you will see on the right the “PMC Image Search” box. Then you can click on the images. Here’s the original announcement about the Images database for more details: Canese K. PubMed® Display Enhanced with Images from the New NCBI Images Database. NLM Tech Bull. 2010 Sep-Oct;(376):e14.